Thursday, April 21, 2011

playing with Cytoscape

and I transferred part of the SonicSpace (my old test space for theWheel) in to cytoscape and used a force-directed layout to get the following (with some manual tweaks):


I also manually changed the size of the nodes, though ideally I would like to implement a cytoscape plugin that would propagate activation changes for me.

Would also like to experiment with cytoscape web, whenever I have the time.
at No comments: Links to this post
Labels: , ,
Subscribe to: Posts (Atom)

A picture of IEC Table rotations

I have always struggled with a mental picture to help understand how rotation directions work in IEC table coordinates.  As we were looking...

  • WarpTPS
    One of the problems to be addressed for adaptive treatment paradigms is the need to visualize and interact with deformable vector fields (...
  • Teramedica Zero-Footprint Viewer
    Server-side rendering is probably the easier option for an organization with limited technical resources. The delays are noticeable in t...
  • Crowd Sourcing and Anonymous Science
    Maybe the future of science will be in the form of crowd-sourced anonymous discussions, which will be used to formulate testable hypotheses...