Thursday, April 21, 2011

playing with Cytoscape

and I transferred part of the SonicSpace (my old test space for theWheel) in to cytoscape and used a force-directed layout to get the following (with some manual tweaks):


I also manually changed the size of the nodes, though ideally I would like to implement a cytoscape plugin that would propagate activation changes for me.

Would also like to experiment with cytoscape web, whenever I have the time.

SRO Decoder Ring QA Worklist

And in the sledgehammer solution department--as mentioned in the previous post, the problem of mapping SRO meaning is insidious.  Confusion...